Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10520647	0.80[ASN][1000 genomes]
rs11073690	1.00[EUR][1000 genomes]
rs12102152	1.00[EUR][1000 genomes]
rs1392165	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1433465	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1433466	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16939838	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1897662	1.00[EUR][1000 genomes]
rs2217708	0.84[ASN][1000 genomes]
rs2347974	0.90[AFR][1000 genomes]
rs2347975	0.85[AFR][1000 genomes]
rs4547304	0.82[AFR][1000 genomes]
rs56053082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60033256	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7181227	0.84[ASN][1000 genomes]
rs7181984	0.84[ASN][1000 genomes]
rs73449124	1.00[EUR][1000 genomes]
rs73450878	1.00[EUR][1000 genomes]
rs74025749	1.00[EUR][1000 genomes]
rs74026001	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74028914	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74028937	1.00[EUR][1000 genomes]
rs8028575	1.00[EUR][1000 genomes]
rs8033390	0.83[ASN][1000 genomes]
rs8036772	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428646	chr15:87612249-87759363	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87643200-87644000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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