Variant report

Variant	rs73455351
Chromosome Location	chr6:56064672-56064673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2206680	1.00[AMR][1000 genomes]
rs2764062	0.89[AFR][1000 genomes]
rs2840997	0.81[AFR][1000 genomes]
rs57134256	1.00[AMR][1000 genomes]
rs57362561	1.00[AMR][1000 genomes]
rs73455156	1.00[AMR][1000 genomes]
rs73457033	1.00[AMR][1000 genomes]
rs73457043	1.00[AMR][1000 genomes]
rs73747606	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56062000-56064800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
3	chr6:56064400-56065000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:56064400-56065000	Enhancers	Osteobl	bone
5	chr6:56064400-56065200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:56064400-56065200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56064400-56065200	Enhancers	NHDF-Ad	bronchial
8	chr6:56064600-56065000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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