Variant report

Variant	rs73747606
Chromosome Location	chr6:56045347-56045348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2764062	1.00[AFR][1000 genomes]
rs2840997	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55983353	0.81[AFR][1000 genomes]
rs61659830	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455351	0.89[AFR][1000 genomes]
rs73457156	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
2	chr6:56040800-56045800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:56041000-56046000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:56041000-56047400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:56042000-56046200	Weak transcription	Fetal Kidney	kidney
6	chr6:56043200-56046200	Weak transcription	NHDF-Ad	bronchial
7	chr6:56044000-56045800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:56044000-56052400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:56044800-56055600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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