Variant report

Variant	rs73457156
Chromosome Location	chr6:56087303-56087304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2764062	0.89[AFR][1000 genomes]
rs2840997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61659830	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:56085000-56093600	Enhancers	NHDF-Ad	bronchial
4	chr6:56086200-56088600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:56086200-56088600	Weak transcription	HMEC	breast
6	chr6:56086200-56088600	Weak transcription	NHEK	skin
7	chr6:56086200-56088800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:56086200-56092600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:56086600-56093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:56087000-56089600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:56087000-56090400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:56087200-56088800	Enhancers	A549	lung
13	chr6:56087200-56090200	Enhancers	Colon Smooth Muscle	Colon
14	chr6:56087200-56090400	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links