Variant report

Variant	rs73462305
Chromosome Location	chr9:79436762-79436763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10119188	1.00[EUR][1000 genomes]
rs10120866	1.00[EUR][1000 genomes]
rs10120887	1.00[EUR][1000 genomes]
rs10123386	1.00[EUR][1000 genomes]
rs10123459	1.00[EUR][1000 genomes]
rs10125699	1.00[EUR][1000 genomes]
rs12349066	1.00[EUR][1000 genomes]
rs12352019	1.00[EUR][1000 genomes]
rs73460287	0.93[AFR][1000 genomes]
rs9314852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79418400-79451000	Weak transcription	Fetal Stomach	stomach
2	chr9:79432800-79438400	Weak transcription	Aorta	Aorta
3	chr9:79433200-79440400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:79433200-79449800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:79433200-79449800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:79433400-79437000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:79433600-79438600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:79433600-79438800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:79433600-79439000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:79433600-79439400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:79433800-79440200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:79433800-79440600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:79434000-79438000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:79434000-79440200	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:79434200-79439000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:79434200-79441800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:79434200-79449800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:79434400-79438200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:79434400-79442200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:79434400-79442600	Strong transcription	HSMM	muscle
21	chr9:79434800-79438800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:79435000-79438200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:79435000-79440400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:79435000-79440400	Weak transcription	Brain Substantia Nigra	brain
25	chr9:79435200-79438200	Weak transcription	HSMMtube	muscle
26	chr9:79435200-79439600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:79435600-79455800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:79436200-79441600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:79436200-79441800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:79436200-79442400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:79436600-79439800	Weak transcription	Colon Smooth Muscle	Colon

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