Variant report

Variant	rs10125699
Chromosome Location	chr9:79301684-79301685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79300396..79301994-chr9:79302706..79305324,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10116826	1.00[EUR][1000 genomes]
rs10117138	1.00[EUR][1000 genomes]
rs10119188	1.00[EUR][1000 genomes]
rs10120866	1.00[EUR][1000 genomes]
rs10120887	1.00[EUR][1000 genomes]
rs10123386	1.00[EUR][1000 genomes]
rs10123459	1.00[EUR][1000 genomes]
rs11144936	1.00[EUR][1000 genomes]
rs12003549	1.00[EUR][1000 genomes]
rs12340744	1.00[EUR][1000 genomes]
rs12343728	1.00[EUR][1000 genomes]
rs12349066	1.00[EUR][1000 genomes]
rs12352019	1.00[EUR][1000 genomes]
rs28803171	1.00[EUR][1000 genomes]
rs4606124	1.00[EUR][1000 genomes]
rs57011789	1.00[EUR][1000 genomes]
rs73462305	1.00[EUR][1000 genomes]
rs7874984	1.00[EUR][1000 genomes]
rs9314852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:79283000-79302600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:79283000-79303000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:79283800-79302000	Weak transcription	Aorta	Aorta
7	chr9:79290400-79306000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:79292200-79301800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:79293000-79302000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:79293000-79302000	Weak transcription	HSMM	muscle
11	chr9:79293000-79302200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:79295400-79303000	Weak transcription	Brain Angular Gyrus	brain
13	chr9:79296000-79303000	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:79296600-79301800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:79296600-79302000	Weak transcription	Osteobl	bone
16	chr9:79296800-79304800	Weak transcription	Fetal Thymus	thymus
17	chr9:79298200-79303600	Weak transcription	Small Intestine	intestine
18	chr9:79298800-79303200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:79299400-79302400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:79299400-79303400	Weak transcription	Brain Anterior Caudate	brain
21	chr9:79299400-79303400	Weak transcription	Brain Substantia Nigra	brain
22	chr9:79299600-79302200	Weak transcription	HUVEC	blood vessel
23	chr9:79300400-79302000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:79300600-79302200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:79300800-79302400	Weak transcription	HSMMtube	muscle
27	chr9:79300800-79304200	Enhancers	NHDF-Ad	bronchial
28	chr9:79301400-79301800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:79301600-79305000	Enhancers	Stomach Mucosa	stomach

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