Variant report

Variant	rs12349066
Chromosome Location	chr9:79285014-79285015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10116826	1.00[EUR][1000 genomes]
rs10117138	1.00[EUR][1000 genomes]
rs10119188	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10120866	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10120887	1.00[EUR][1000 genomes]
rs10123386	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10123459	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10125699	1.00[EUR][1000 genomes]
rs11144936	1.00[EUR][1000 genomes]
rs12003549	1.00[EUR][1000 genomes]
rs12340744	1.00[EUR][1000 genomes]
rs12343728	1.00[EUR][1000 genomes]
rs12352019	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17062615	1.00[EUR][1000 genomes]
rs17062617	1.00[EUR][1000 genomes]
rs17062620	1.00[EUR][1000 genomes]
rs28803171	1.00[EUR][1000 genomes]
rs4606124	1.00[EUR][1000 genomes]
rs57011789	1.00[EUR][1000 genomes]
rs7032475	1.00[EUR][1000 genomes]
rs73462305	1.00[EUR][1000 genomes]
rs7874984	1.00[EUR][1000 genomes]
rs9314852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79271600-79285200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:79282600-79292400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:79282800-79286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:79283000-79291600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:79283000-79302600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:79283000-79303000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:79283400-79291400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:79283600-79291600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:79283800-79302000	Weak transcription	Aorta	Aorta
13	chr9:79285000-79291400	Weak transcription	HSMM	muscle
14	chr9:79285000-79292200	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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