Variant report

Variant	rs28803171
Chromosome Location	chr9:79127887-79127888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79099514..79101931-chr9:79127814..79129631,2	MCF-7	breast:
2	chr9:79125526..79127916-chr9:79192388..79194020,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10116826	1.00[EUR][1000 genomes]
rs10117138	1.00[EUR][1000 genomes]
rs10119188	1.00[EUR][1000 genomes]
rs10120866	1.00[EUR][1000 genomes]
rs10120887	1.00[EUR][1000 genomes]
rs10123386	1.00[EUR][1000 genomes]
rs10123459	1.00[EUR][1000 genomes]
rs10125699	1.00[EUR][1000 genomes]
rs11144936	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12000462	1.00[EUR][1000 genomes]
rs12003549	1.00[EUR][1000 genomes]
rs12340744	1.00[EUR][1000 genomes]
rs12343728	1.00[EUR][1000 genomes]
rs12349066	1.00[EUR][1000 genomes]
rs12352019	1.00[EUR][1000 genomes]
rs17062615	1.00[EUR][1000 genomes]
rs17062617	1.00[EUR][1000 genomes]
rs17062620	1.00[EUR][1000 genomes]
rs28607333	1.00[EUR][1000 genomes]
rs35340990	1.00[EUR][1000 genomes]
rs4606124	1.00[EUR][1000 genomes]
rs56914572	1.00[EUR][1000 genomes]
rs57011789	1.00[EUR][1000 genomes]
rs7027657	1.00[EUR][1000 genomes]
rs7032475	1.00[EUR][1000 genomes]
rs7874984	1.00[EUR][1000 genomes]
rs9314852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv437089	chr9:79116975-79139590	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
2	chr9:79118600-79134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:79118800-79136400	Weak transcription	Gastric	stomach
4	chr9:79118800-79145800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr9:79119200-79134000	Weak transcription	Fetal Intestine Small	intestine
6	chr9:79119800-79130400	Weak transcription	Primary B cells from cord blood	blood
7	chr9:79119800-79132200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:79120400-79134000	Weak transcription	Fetal Intestine Large	intestine
9	chr9:79120400-79145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:79120600-79128000	Weak transcription	HSMM	muscle
11	chr9:79120600-79131000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:79120800-79131200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:79120800-79131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:79122600-79131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:79126400-79140800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:79127400-79128200	Enhancers	NHDF-Ad	bronchial
17	chr9:79127400-79128400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:79127400-79128400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:79127400-79128400	Enhancers	Osteobl	bone
20	chr9:79127600-79128000	Enhancers	HMEC	breast
21	chr9:79127600-79128200	Enhancers	HSMMtube	muscle
22	chr9:79127600-79128400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:79127600-79128400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:79127600-79128400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:79127600-79128600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:79127800-79128000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:79127800-79128200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr9:79127800-79128400	Enhancers	NHLF	lung

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