Variant report

Variant	rs10116826
Chromosome Location	chr9:79114359-79114360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79112993..79114512-chr9:79134842..79136491,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10117138	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10119188	1.00[EUR][1000 genomes]
rs10120866	1.00[EUR][1000 genomes]
rs10120887	1.00[EUR][1000 genomes]
rs10123386	1.00[EUR][1000 genomes]
rs10123459	1.00[EUR][1000 genomes]
rs10125699	1.00[EUR][1000 genomes]
rs11144936	1.00[EUR][1000 genomes]
rs12000462	1.00[EUR][1000 genomes]
rs12003549	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12340744	1.00[EUR][1000 genomes]
rs12343728	1.00[EUR][1000 genomes]
rs12349066	1.00[EUR][1000 genomes]
rs12352019	1.00[EUR][1000 genomes]
rs17062615	1.00[EUR][1000 genomes]
rs17062617	1.00[EUR][1000 genomes]
rs17062620	1.00[EUR][1000 genomes]
rs28607333	1.00[EUR][1000 genomes]
rs28803171	1.00[EUR][1000 genomes]
rs35340990	1.00[EUR][1000 genomes]
rs4606124	1.00[EUR][1000 genomes]
rs56914572	1.00[EUR][1000 genomes]
rs57011789	1.00[EUR][1000 genomes]
rs7023916	1.00[YRI][hapmap]
rs7027657	1.00[EUR][1000 genomes]
rs7032475	1.00[EUR][1000 genomes]
rs7874984	1.00[EUR][1000 genomes]
rs9314852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:79081800-79117200	Weak transcription	Gastric	stomach
4	chr9:79082600-79117600	Weak transcription	NHLF	lung
5	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
6	chr9:79089000-79116400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
8	chr9:79093600-79117200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:79093800-79116600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:79093800-79117000	Weak transcription	HMEC	breast
11	chr9:79093800-79118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:79094200-79120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:79097200-79117200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:79101200-79116400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:79103800-79117200	Weak transcription	Lung	lung
16	chr9:79103800-79117800	Weak transcription	Thymus	Thymus
17	chr9:79104200-79117400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:79104400-79117400	Weak transcription	Small Intestine	intestine
19	chr9:79104600-79117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:79105800-79117200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:79106200-79117200	Weak transcription	HUVEC	blood vessel
22	chr9:79106600-79115000	Weak transcription	Stomach Mucosa	stomach
23	chr9:79107000-79116600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:79107600-79116400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr9:79108000-79117200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:79108200-79117800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:79108400-79114400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:79108800-79117200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:79109000-79115400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:79109200-79117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:79109200-79117200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:79109400-79117200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:79109400-79117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:79110200-79116200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:79110400-79117400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:79110600-79117000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr9:79110800-79116600	Weak transcription	GM12878-XiMat	blood
38	chr9:79111200-79116400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:79111200-79116400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr9:79111400-79116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:79111600-79115200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:79111600-79115200	Weak transcription	Fetal Intestine Large	intestine
43	chr9:79111600-79116200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr9:79112000-79115400	Weak transcription	HSMM	muscle
45	chr9:79112000-79117800	Weak transcription	Fetal Intestine Small	intestine
46	chr9:79112000-79120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:79112400-79115000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr9:79112400-79116600	Weak transcription	NHDF-Ad	bronchial
49	chr9:79112600-79115200	Weak transcription	Primary B cells from cord blood	blood
50	chr9:79112600-79117200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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