Variant report

Variant	rs73462428
Chromosome Location	chr13:38412302-38412303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34311615	0.83[AFR][1000 genomes]
rs35681998	0.82[AFR][1000 genomes]
rs73460375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460402	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73462414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9532125	0.81[AFR][1000 genomes]
rs9548064	0.83[AFR][1000 genomes]
rs9548077	0.83[AFR][1000 genomes]
rs9548078	0.87[AFR][1000 genomes]
rs9548079	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38402000-38418600	Weak transcription	Ovary	ovary
2	chr13:38403000-38421400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:38409600-38422600	Weak transcription	Osteobl	bone
4	chr13:38410800-38412600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr13:38411000-38412600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:38411200-38412600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links