Variant report

Variant	rs9548077
Chromosome Location	chr13:38421957-38421958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1077026	0.88[EUR][1000 genomes]
rs12583028	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12583641	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12872351	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874874	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415602	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1577876	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17272200	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2093812	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2104326	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34311615	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824702	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35681998	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462414	0.81[AFR][1000 genomes]
rs73462428	0.83[AFR][1000 genomes]
rs9532122	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9532125	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532126	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9532128	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548060	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548061	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548064	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548065	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548066	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548067	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9548069	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548070	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548074	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548076	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548079	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9548080	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548082	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9548083	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9548088	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38409600-38422600	Weak transcription	Osteobl	bone
2	chr13:38419200-38423800	Weak transcription	Ovary	ovary
3	chr13:38421000-38426800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:38421600-38424800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:38421600-38430200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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