Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38448816..38451561-chr22:30643041..30645856,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1077026	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583028	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12583641	0.89[EUR][1000 genomes]
rs12872351	0.88[EUR][1000 genomes]
rs12874874	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs1415602	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1577876	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs17272200	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2093812	0.81[EUR][1000 genomes]
rs2104326	0.81[EUR][1000 genomes]
rs34311615	0.89[EUR][1000 genomes]
rs34824702	0.81[EUR][1000 genomes]
rs35681998	0.89[EUR][1000 genomes]
rs7996599	0.89[EUR][1000 genomes]
rs9532122	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9532125	0.89[EUR][1000 genomes]
rs9532126	0.81[EUR][1000 genomes]
rs9532128	0.80[EUR][1000 genomes]
rs9548060	0.87[EUR][1000 genomes]
rs9548061	0.89[EUR][1000 genomes]
rs9548064	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9548065	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs9548066	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9548067	0.81[EUR][1000 genomes]
rs9548069	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9548070	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs9548074	0.81[EUR][1000 genomes]
rs9548076	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs9548077	0.91[EUR][1000 genomes]
rs9548078	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs9548079	0.91[EUR][1000 genomes]
rs9548080	0.80[EUR][1000 genomes]
rs9548082	0.89[EUR][1000 genomes]
rs9548083	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38444800-38462200	Weak transcription	Pancreas	Pancrea
2	chr13:38446000-38449800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:38447200-38452600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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