Variant report

Variant	rs1077026
Chromosome Location	chr13:38457720-38457721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38457165..38458884-chr13:38460417..38462936,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12583028	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12583641	0.86[EUR][1000 genomes]
rs12872351	0.86[EUR][1000 genomes]
rs12874874	0.90[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs1415602	0.89[EUR][1000 genomes]
rs1577876	0.85[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs17272200	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs1819607	0.91[MEX][hapmap]
rs2093812	0.80[TSI][hapmap]
rs2104326	0.80[TSI][hapmap]
rs34311615	0.86[EUR][1000 genomes]
rs35681998	0.86[EUR][1000 genomes]
rs3812837	0.91[MEX][hapmap]
rs3812840	0.91[MEX][hapmap]
rs7996599	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9532122	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9532125	0.86[EUR][1000 genomes]
rs9532126	0.80[TSI][hapmap]
rs9532131	0.91[MEX][hapmap]
rs9548060	0.84[EUR][1000 genomes]
rs9548061	0.86[EUR][1000 genomes]
rs9548064	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9548065	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs9548066	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs9548069	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9548070	0.85[CEU][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs9548076	0.90[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9548077	0.88[EUR][1000 genomes]
rs9548078	0.90[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs9548079	0.89[EUR][1000 genomes]
rs9548082	0.87[EUR][1000 genomes]
rs9548083	0.92[EUR][1000 genomes]
rs9548088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv983707	chr13:38456859-38460148	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1077026	KL	cis	parietal	SCAN
rs1077026	SMAD9	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38444800-38462200	Weak transcription	Pancreas	Pancrea
2	chr13:38452800-38458000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:38453200-38458400	Weak transcription	Osteobl	bone
4	chr13:38457400-38457800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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