Variant report

Variant	rs34311615
Chromosome Location	chr13:38411315-38411316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1077026	0.86[EUR][1000 genomes]
rs12583028	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12583641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12872351	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874874	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415602	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1577876	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17272200	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2093812	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2104326	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34824702	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35681998	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462414	0.81[AFR][1000 genomes]
rs73462428	0.83[AFR][1000 genomes]
rs9532122	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9532125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532126	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9532128	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548065	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548066	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548067	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9548069	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548070	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548074	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548076	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548077	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548078	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548079	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9548080	0.87[EUR][1000 genomes]
rs9548082	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548083	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548088	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38402000-38418600	Weak transcription	Ovary	ovary
2	chr13:38403000-38421400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:38409600-38422600	Weak transcription	Osteobl	bone
4	chr13:38410600-38412000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:38410800-38412600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr13:38411000-38411400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:38411000-38412600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:38411200-38412600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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