Variant report

Variant	rs73465566
Chromosome Location	chr9:85555494-85555495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11139866	1.00[AMR][1000 genomes]
rs17085873	0.89[AFR][1000 genomes]
rs17085881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085906	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57671245	0.89[AFR][1000 genomes]
rs58922119	0.89[AFR][1000 genomes]
rs59796082	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59920502	0.89[AFR][1000 genomes]
rs60414804	1.00[AMR][1000 genomes]
rs61210121	1.00[AMR][1000 genomes]
rs73465532	1.00[AFR][1000 genomes]
rs73465558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465565	1.00[AMR][1000 genomes]
rs73465577	1.00[AMR][1000 genomes]
rs73465579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85552800-85555600	Enhancers	A549	lung
2	chr9:85555200-85555600	Enhancers	Stomach Mucosa	stomach
3	chr9:85555400-85555600	Enhancers	Pancreas	Pancrea
4	chr9:85555400-85555800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:85555400-85555800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:85555400-85555800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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