Variant report
| Variant | rs59796082 |
|---|---|
| Chromosome Location | chr9:85561669-85561670 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:85554615..85558386-chr9:85560270..85563737,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10121180 | 0.95[ASN][1000 genomes] |
| rs11139866 | 1.00[AMR][1000 genomes] |
| rs17085873 | 0.95[ASN][1000 genomes] |
| rs17085881 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17085888 | 1.00[ASN][1000 genomes] |
| rs17085906 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56669830 | 0.95[ASN][1000 genomes] |
| rs57063034 | 0.95[ASN][1000 genomes] |
| rs57671245 | 0.95[ASN][1000 genomes] |
| rs58018541 | 0.95[ASN][1000 genomes] |
| rs58922119 | 0.95[ASN][1000 genomes] |
| rs59225257 | 0.95[ASN][1000 genomes] |
| rs59920502 | 0.90[ASN][1000 genomes] |
| rs60203521 | 0.95[ASN][1000 genomes] |
| rs60414804 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61164991 | 0.95[ASN][1000 genomes] |
| rs61210121 | 1.00[AMR][1000 genomes] |
| rs61586245 | 0.95[ASN][1000 genomes] |
| rs61616708 | 1.00[ASN][1000 genomes] |
| rs73465526 | 0.95[ASN][1000 genomes] |
| rs73465532 | 0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73465534 | 0.95[ASN][1000 genomes] |
| rs73465540 | 0.95[ASN][1000 genomes] |
| rs73465547 | 0.95[ASN][1000 genomes] |
| rs73465550 | 0.95[ASN][1000 genomes] |
| rs73465554 | 0.95[ASN][1000 genomes] |
| rs73465555 | 0.95[ASN][1000 genomes] |
| rs73465557 | 0.95[ASN][1000 genomes] |
| rs73465558 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73465560 | 0.95[ASN][1000 genomes] |
| rs73465561 | 0.95[ASN][1000 genomes] |
| rs73465565 | 1.00[AMR][1000 genomes] |
| rs73465566 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73465577 | 1.00[AMR][1000 genomes] |
| rs73465579 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7871725 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050771 | chr9:85416931-85643417 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv893511 | chr9:85495968-85833127 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85561000-85562000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr9:85561600-85562000 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
