Variant report

Variant	rs10121180
Chromosome Location	chr9:85549602-85549603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:85548526..85551837-chr9:85553458..85557427,3	MCF-7	breast:
2	chr9:85536750..85538590-chr9:85548632..85551297,2	MCF-7	breast:
3	chr9:84300821..84303529-chr9:85547093..85551016,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196781	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17085873	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17085881	0.95[ASN][1000 genomes]
rs17085888	0.95[ASN][1000 genomes]
rs17085906	0.95[ASN][1000 genomes]
rs56669830	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57063034	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57671245	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58018541	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58922119	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59225257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59796082	0.95[ASN][1000 genomes]
rs59920502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60203521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60414804	0.85[ASN][1000 genomes]
rs61164991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61586245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61616708	0.95[ASN][1000 genomes]
rs73465526	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465532	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465540	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73465561	1.00[ASN][1000 genomes]
rs7871725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85547400-85549800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:85547400-85549800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:85549400-85550000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85549400-85550000	Flanking Active TSS	A549	lung
5	chr9:85549400-85550400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr9:85549400-85550800	Enhancers	HUVEC	blood vessel
7	chr9:85549400-85550800	Enhancers	NH-A	brain
8	chr9:85549600-85550000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:85549600-85550000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:85549600-85550000	Enhancers	HepG2	liver
11	chr9:85549600-85550200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:85549600-85550200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:85549600-85550400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:85549600-85550600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:85549600-85550800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr9:85549600-85550800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:85549600-85550800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:85549600-85550800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:85549600-85550800	Enhancers	HMEC	breast
20	chr9:85549600-85550800	Enhancers	NHEK	skin
21	chr9:85549600-85551200	Enhancers	Dnd41	blood

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