Variant report

Variant	rs61616708
Chromosome Location	chr9:85562167-85562168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10121180	0.95[ASN][1000 genomes]
rs17085873	0.95[ASN][1000 genomes]
rs17085881	1.00[ASN][1000 genomes]
rs17085888	1.00[ASN][1000 genomes]
rs17085906	1.00[ASN][1000 genomes]
rs56669830	0.95[ASN][1000 genomes]
rs57063034	0.95[ASN][1000 genomes]
rs57671245	0.95[ASN][1000 genomes]
rs58018541	0.95[ASN][1000 genomes]
rs58922119	0.95[ASN][1000 genomes]
rs59225257	0.95[ASN][1000 genomes]
rs59796082	1.00[ASN][1000 genomes]
rs59920502	0.90[ASN][1000 genomes]
rs60203521	0.95[ASN][1000 genomes]
rs60414804	0.90[ASN][1000 genomes]
rs61164991	0.95[ASN][1000 genomes]
rs61586245	0.95[ASN][1000 genomes]
rs73465526	0.95[ASN][1000 genomes]
rs73465532	0.95[ASN][1000 genomes]
rs73465534	0.95[ASN][1000 genomes]
rs73465540	0.95[ASN][1000 genomes]
rs73465547	0.95[ASN][1000 genomes]
rs73465550	0.95[ASN][1000 genomes]
rs73465554	0.95[ASN][1000 genomes]
rs73465555	0.95[ASN][1000 genomes]
rs73465557	0.95[ASN][1000 genomes]
rs73465560	0.95[ASN][1000 genomes]
rs73465561	0.95[ASN][1000 genomes]
rs7871725	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85561800-85563600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:85562000-85563200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:85562000-85563600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85562000-85563600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:85562000-85563600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:85562000-85563800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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