Variant report
| Variant | rs17085888 |
|---|---|
| Chromosome Location | chr9:85564404-85564405 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:85563140..85565431-chr9:85567706..85570492,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10121180 | 1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs17085873 | 0.95[ASN][1000 genomes] |
| rs17085881 | 1.00[ASN][1000 genomes] |
| rs17085906 | 1.00[ASN][1000 genomes] |
| rs56669830 | 0.95[ASN][1000 genomes] |
| rs57063034 | 0.95[ASN][1000 genomes] |
| rs57671245 | 0.95[ASN][1000 genomes] |
| rs58018541 | 0.95[ASN][1000 genomes] |
| rs58922119 | 0.95[ASN][1000 genomes] |
| rs59225257 | 0.95[ASN][1000 genomes] |
| rs59796082 | 1.00[ASN][1000 genomes] |
| rs59920502 | 0.90[ASN][1000 genomes] |
| rs60203521 | 0.95[ASN][1000 genomes] |
| rs60414804 | 0.90[ASN][1000 genomes] |
| rs61164991 | 0.95[ASN][1000 genomes] |
| rs61586245 | 0.95[ASN][1000 genomes] |
| rs61616708 | 1.00[ASN][1000 genomes] |
| rs73465526 | 0.95[ASN][1000 genomes] |
| rs73465532 | 0.95[ASN][1000 genomes] |
| rs73465534 | 0.95[ASN][1000 genomes] |
| rs73465540 | 0.95[ASN][1000 genomes] |
| rs73465547 | 0.95[ASN][1000 genomes] |
| rs73465550 | 0.95[ASN][1000 genomes] |
| rs73465554 | 0.95[ASN][1000 genomes] |
| rs73465555 | 0.95[ASN][1000 genomes] |
| rs73465557 | 0.95[ASN][1000 genomes] |
| rs73465560 | 0.95[ASN][1000 genomes] |
| rs73465561 | 0.95[ASN][1000 genomes] |
| rs7871725 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050771 | chr9:85416931-85643417 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv893511 | chr9:85495968-85833127 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85563400-85565000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr9:85563400-85565000 | Enhancers | HMEC | breast |
