Variant report

Variant	rs17085906
Chromosome Location	chr9:85570117-85570118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85563140..85565431-chr9:85567706..85570492,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10121180	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[ASN][1000 genomes]
rs11139866	1.00[AMR][1000 genomes]
rs17085873	0.95[ASN][1000 genomes]
rs17085881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17085888	1.00[ASN][1000 genomes]
rs56669830	0.95[ASN][1000 genomes]
rs57063034	0.95[ASN][1000 genomes]
rs57671245	0.95[ASN][1000 genomes]
rs58018541	0.95[ASN][1000 genomes]
rs58922119	0.95[ASN][1000 genomes]
rs59225257	0.95[ASN][1000 genomes]
rs59796082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59920502	0.90[ASN][1000 genomes]
rs60203521	0.95[ASN][1000 genomes]
rs60414804	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61164991	0.95[ASN][1000 genomes]
rs61210121	1.00[AMR][1000 genomes]
rs61586245	0.95[ASN][1000 genomes]
rs61616708	1.00[ASN][1000 genomes]
rs73465526	0.95[ASN][1000 genomes]
rs73465532	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73465534	0.95[ASN][1000 genomes]
rs73465540	0.95[ASN][1000 genomes]
rs73465547	0.95[ASN][1000 genomes]
rs73465550	0.95[ASN][1000 genomes]
rs73465554	0.95[ASN][1000 genomes]
rs73465555	0.95[ASN][1000 genomes]
rs73465557	0.95[ASN][1000 genomes]
rs73465558	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465560	0.95[ASN][1000 genomes]
rs73465561	0.95[ASN][1000 genomes]
rs73465565	1.00[AMR][1000 genomes]
rs73465566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465577	1.00[AMR][1000 genomes]
rs73465579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871725	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6585	chr9:85566659-85611489	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85568000-85572200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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