Variant report
Variant | rs73469321 |
---|---|
Chromosome Location | chr6:69941513-69941514 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MXI1 | chr6:69940711-69943670 | SK-N-SH | brain: | n/a | n/a |
2 | GATA3 | chr6:69941035-69942186 | SH-SY5Y | brain: | n/a | chr6:69941455-69941476 chr6:69941462-69941469 chr6:69941462-69941473 chr6:69941451-69941468 chr6:69941462-69941469 chr6:69941462-69941469 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
BAI3 | TF binding region |
rs_ID | r2[population] |
---|---|
rs56680460 | 1.00[AMR][1000 genomes] |
rs73467735 | 1.00[AMR][1000 genomes] |
rs73467741 | 1.00[AMR][1000 genomes] |
rs73467747 | 1.00[AMR][1000 genomes] |
rs73467751 | 1.00[AMR][1000 genomes] |
rs73467770 | 1.00[AMR][1000 genomes] |
rs73467774 | 1.00[AMR][1000 genomes] |
rs73467776 | 1.00[AMR][1000 genomes] |
rs73467785 | 1.00[AMR][1000 genomes] |
rs73467786 | 1.00[AMR][1000 genomes] |
rs73467790 | 0.85[AFR][1000 genomes] |
rs73469306 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73469328 | 1.00[AMR][1000 genomes] |
rs73469334 | 1.00[AMR][1000 genomes] |
rs73469337 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv886137 | chr6:69684850-70095690 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv432919 | chr6:69873179-70221322 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:69941400-69941600 | Enhancers | Fetal Lung | lung |