Variant report

Variant	rs73467774
Chromosome Location	chr6:69872745-69872746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56680460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467735	1.00[AMR][1000 genomes]
rs73467741	1.00[AMR][1000 genomes]
rs73467747	1.00[AMR][1000 genomes]
rs73467751	1.00[AMR][1000 genomes]
rs73467770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467776	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469306	1.00[AMR][1000 genomes]
rs73469321	1.00[AMR][1000 genomes]
rs73469328	1.00[AMR][1000 genomes]
rs73469334	1.00[AMR][1000 genomes]
rs73469337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69872400-69873200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69872600-69875200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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