Variant report

Variant	rs73467786
Chromosome Location	chr6:69890589-69890590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56680460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467735	1.00[AMR][1000 genomes]
rs73467741	1.00[AMR][1000 genomes]
rs73467747	1.00[AMR][1000 genomes]
rs73467751	1.00[AMR][1000 genomes]
rs73467770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469306	1.00[AMR][1000 genomes]
rs73469321	1.00[AMR][1000 genomes]
rs73469328	1.00[AMR][1000 genomes]
rs73469334	1.00[AMR][1000 genomes]
rs73469337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69877000-69891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69889800-69890600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:69889800-69890800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:69889800-69891000	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69889800-69891000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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