Variant report

Variant	rs73469362
Chromosome Location	chr15:99769436-99769437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99768986..99771522-chr15:99790162..99791793,2	K562	blood:
2	chr15:99767475..99769524-chr15:99789564..99792407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168904	Chromatin interaction
ENSG00000103852	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58371295	1.00[AMR][1000 genomes]
rs60234322	1.00[AMR][1000 genomes]
rs60531793	1.00[AMR][1000 genomes]
rs73469368	1.00[AMR][1000 genomes]
rs73471380	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1045124	chr15:99504843-99847210	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
9	nsv1051782	chr15:99621061-99792967	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
13	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
14	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	nsv1052528	chr15:99736977-99874210	Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
17	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
18	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99673200-99789400	Weak transcription	Small Intestine	intestine
2	chr15:99724400-99769600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:99733400-99787400	Weak transcription	NHEK	skin
4	chr15:99749800-99789400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:99750000-99789400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:99756600-99789400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:99758600-99789400	Weak transcription	Brain Substantia Nigra	brain
8	chr15:99759200-99769800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:99759200-99788400	Weak transcription	Fetal Thymus	thymus
10	chr15:99759400-99781800	Weak transcription	Spleen	Spleen
11	chr15:99759400-99788600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:99759400-99788600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:99761000-99778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:99761400-99771000	Weak transcription	GM12878-XiMat	blood
15	chr15:99761400-99781800	Weak transcription	Pancreas	Pancrea
16	chr15:99761400-99788400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:99761800-99769800	Weak transcription	Thymus	Thymus
18	chr15:99761800-99772800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:99762000-99780400	Weak transcription	Esophagus	oesophagus
20	chr15:99762400-99772800	Weak transcription	A549	lung
21	chr15:99762600-99789400	Weak transcription	Gastric	stomach
22	chr15:99762800-99774800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:99765400-99784000	Weak transcription	Hela-S3	cervix
24	chr15:99765600-99789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:99765800-99769800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:99765800-99778600	Weak transcription	Psoas Muscle	Psoas
27	chr15:99765800-99778800	Weak transcription	HUVEC	blood vessel
28	chr15:99765800-99789400	Weak transcription	Lung	lung
29	chr15:99766200-99770200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:99766200-99780000	Weak transcription	Placenta	Placenta
31	chr15:99767000-99778600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:99767200-99781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:99767600-99770000	Strong transcription	Fetal Lung	lung
34	chr15:99768000-99778200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:99768200-99788600	Weak transcription	Colonic Mucosa	Colon
36	chr15:99768200-99789200	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:99768400-99769800	Enhancers	Liver	Liver
38	chr15:99768400-99776400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:99768600-99774800	Weak transcription	Fetal Muscle Leg	muscle
40	chr15:99768600-99775000	Weak transcription	Fetal Stomach	stomach
41	chr15:99768600-99776000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:99768600-99778600	Weak transcription	Aorta	Aorta
43	chr15:99768600-99780000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:99768600-99780600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:99768600-99780800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:99768600-99781000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:99768600-99781000	Weak transcription	Right Ventricle	heart
48	chr15:99768600-99787200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:99768600-99787200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:99768600-99787200	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links