Variant report

Variant	rs73471664
Chromosome Location	chr18:40459359-40459360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4890414	0.83[AFR][1000 genomes]
rs58101588	0.91[AFR][1000 genomes]
rs59653549	0.91[AFR][1000 genomes]
rs59683298	0.87[AFR][1000 genomes]
rs59916361	1.00[AFR][1000 genomes]
rs7229454	0.96[AFR][1000 genomes]
rs73470099	0.87[AFR][1000 genomes]
rs73471613	0.91[AFR][1000 genomes]
rs73471615	0.87[AFR][1000 genomes]
rs73471616	0.91[AFR][1000 genomes]
rs73471625	0.91[AFR][1000 genomes]
rs73471630	0.88[AFR][1000 genomes]
rs73471631	0.91[AFR][1000 genomes]
rs73471633	0.91[AFR][1000 genomes]
rs73471639	0.91[AFR][1000 genomes]
rs73471644	0.98[AFR][1000 genomes]
rs73471646	0.83[AFR][1000 genomes]
rs73471649	0.95[AFR][1000 genomes]
rs73471651	0.98[AFR][1000 genomes]
rs73471654	0.81[AFR][1000 genomes]
rs73471660	1.00[AFR][1000 genomes]
rs73471665	1.00[AFR][1000 genomes]
rs73471671	1.00[AFR][1000 genomes]
rs73471675	1.00[AFR][1000 genomes]
rs8085172	0.83[AFR][1000 genomes]
rs8089316	0.81[AFR][1000 genomes]
rs8090204	0.91[AFR][1000 genomes]
rs8090427	0.91[AFR][1000 genomes]
rs8091616	1.00[AFR][1000 genomes]
rs8093580	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links