Variant report

Variant	rs59653549
Chromosome Location	chr18:40445432-40445433
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs58101588	1.00[AFR][1000 genomes]
rs59683298	0.96[AFR][1000 genomes]
rs59916361	0.91[AFR][1000 genomes]
rs7229454	0.94[AFR][1000 genomes]
rs73470099	0.96[AFR][1000 genomes]
rs73471613	1.00[AFR][1000 genomes]
rs73471615	0.96[AFR][1000 genomes]
rs73471616	1.00[AFR][1000 genomes]
rs73471625	1.00[AFR][1000 genomes]
rs73471630	0.96[AFR][1000 genomes]
rs73471631	1.00[AFR][1000 genomes]
rs73471633	1.00[AFR][1000 genomes]
rs73471639	1.00[AFR][1000 genomes]
rs73471644	0.93[AFR][1000 genomes]
rs73471649	0.86[AFR][1000 genomes]
rs73471651	0.89[AFR][1000 genomes]
rs73471660	0.91[AFR][1000 genomes]
rs73471664	0.91[AFR][1000 genomes]
rs73471665	0.91[AFR][1000 genomes]
rs73471671	0.91[AFR][1000 genomes]
rs73471675	0.91[AFR][1000 genomes]
rs8088172	0.85[AFR][1000 genomes]
rs8090204	1.00[AFR][1000 genomes]
rs8090427	1.00[AFR][1000 genomes]
rs8091616	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40443600-40445600	Enhancers	Fetal Intestine Large	intestine
2	chr18:40444400-40445600	Enhancers	Fetal Intestine Small	intestine
3	chr18:40445200-40446400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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