Variant report
| Variant | rs8088172 |
|---|---|
| Chromosome Location | chr18:40443756-40443757 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1944413 | 0.91[YRI][hapmap] |
| rs4890414 | 0.91[YRI][hapmap] |
| rs58101588 | 0.85[AFR][1000 genomes] |
| rs59653549 | 0.85[AFR][1000 genomes] |
| rs59683298 | 0.82[AFR][1000 genomes] |
| rs7229454 | 0.81[AFR][1000 genomes] |
| rs7243068 | 1.00[YRI][hapmap] |
| rs73470099 | 0.82[AFR][1000 genomes] |
| rs73471613 | 0.85[AFR][1000 genomes] |
| rs73471615 | 0.82[AFR][1000 genomes] |
| rs73471616 | 0.85[AFR][1000 genomes] |
| rs73471625 | 0.85[AFR][1000 genomes] |
| rs73471630 | 0.82[AFR][1000 genomes] |
| rs73471631 | 0.85[AFR][1000 genomes] |
| rs73471633 | 0.85[AFR][1000 genomes] |
| rs73471639 | 0.85[AFR][1000 genomes] |
| rs8085172 | 0.91[YRI][hapmap] |
| rs8089316 | 0.91[YRI][hapmap] |
| rs8090204 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs8090427 | 0.85[AFR][1000 genomes] |
| rs8091616 | 1.00[YRI][hapmap] |
| rs8093580 | 0.91[YRI][hapmap] |
| rs8093756 | 0.91[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv2269 | chr18:40430930-40475718 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv909574 | chr18:40440609-40488279 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv909575 | chr18:40440609-40493500 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:40443600-40445600 | Enhancers | Fetal Intestine Large | intestine |
