Variant report

Variant	rs73470099
Chromosome Location	chr18:40425308-40425309
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs58101588	0.96[AFR][1000 genomes]
rs59653549	0.96[AFR][1000 genomes]
rs59683298	1.00[AFR][1000 genomes]
rs59916361	0.87[AFR][1000 genomes]
rs7229454	0.91[AFR][1000 genomes]
rs73471613	0.96[AFR][1000 genomes]
rs73471615	1.00[AFR][1000 genomes]
rs73471616	0.96[AFR][1000 genomes]
rs73471625	0.96[AFR][1000 genomes]
rs73471630	0.93[AFR][1000 genomes]
rs73471631	0.96[AFR][1000 genomes]
rs73471633	0.96[AFR][1000 genomes]
rs73471639	0.96[AFR][1000 genomes]
rs73471644	0.89[AFR][1000 genomes]
rs73471649	0.83[AFR][1000 genomes]
rs73471651	0.86[AFR][1000 genomes]
rs73471660	0.87[AFR][1000 genomes]
rs73471664	0.87[AFR][1000 genomes]
rs73471665	0.87[AFR][1000 genomes]
rs73471671	0.87[AFR][1000 genomes]
rs73471675	0.87[AFR][1000 genomes]
rs8088172	0.82[AFR][1000 genomes]
rs8090204	0.96[AFR][1000 genomes]
rs8090427	0.96[AFR][1000 genomes]
rs8091616	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3331556	chr18:40424054-40427652	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40424800-40434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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