Variant report

Variant	rs73488096
Chromosome Location	chr6:88079243-88079244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56832200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57150106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58499781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59256610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59298848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59329900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60261544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488086	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73488087	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73490116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490134	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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