Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88074976..88076757-chr6:88079576..88082182,2	K562	blood:
2	chr6:88074461..88076476-chr6:88079335..88082182,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1005718	1.00[EUR][1000 genomes]
rs10484884	1.00[EUR][1000 genomes]
rs16879086	1.00[EUR][1000 genomes]
rs16879089	1.00[EUR][1000 genomes]
rs16879117	1.00[EUR][1000 genomes]
rs16879121	1.00[EUR][1000 genomes]
rs16879144	1.00[EUR][1000 genomes]
rs41273287	1.00[EUR][1000 genomes]
rs41273289	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56832200	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57150106	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58499781	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59256610	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59298848	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59329900	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60261544	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61601435	1.00[EUR][1000 genomes]
rs73488074	1.00[EUR][1000 genomes]
rs73488087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488096	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73490116	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490119	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490134	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
2	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:88057600-88077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
6	chr6:88074400-88076800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:88075200-88076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:88075600-88077000	ZNF genes & repeats	K562	blood
9	chr6:88075800-88077000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:88076000-88076600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr6:88076200-88076800	Enhancers	Hela-S3	cervix
12	chr6:88076200-88077000	Enhancers	Placenta	Placenta

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