Variant report

Variant	rs73490134
Chromosome Location	chr6:88088778-88088779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1005718	1.00[EUR][1000 genomes]
rs10484884	1.00[EUR][1000 genomes]
rs16879086	1.00[EUR][1000 genomes]
rs16879089	1.00[EUR][1000 genomes]
rs16879117	1.00[EUR][1000 genomes]
rs16879121	1.00[EUR][1000 genomes]
rs16879144	1.00[EUR][1000 genomes]
rs41273287	1.00[EUR][1000 genomes]
rs41273289	1.00[EUR][1000 genomes]
rs56832200	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57150106	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58499781	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59256610	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59298848	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59329900	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60261544	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61601435	1.00[EUR][1000 genomes]
rs73488074	1.00[EUR][1000 genomes]
rs73488086	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488087	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488096	0.98[AFR][1000 genomes]
rs73490116	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73490119	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
4	chr6:88080200-88093800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:88083600-88088800	Weak transcription	Aorta	Aorta
6	chr6:88088000-88089000	Enhancers	Primary B cells from cord blood	blood
7	chr6:88088200-88089000	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:88088400-88088800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:88088400-88088800	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr6:88088600-88089000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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