Variant report

Variant	rs73488074
Chromosome Location	chr6:88065742-88065743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10484884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879086	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273289	1.00[EUR][1000 genomes]
rs56832200	1.00[EUR][1000 genomes]
rs57150106	1.00[EUR][1000 genomes]
rs58499781	1.00[EUR][1000 genomes]
rs59256610	1.00[EUR][1000 genomes]
rs59298848	1.00[EUR][1000 genomes]
rs59329900	1.00[EUR][1000 genomes]
rs60261544	1.00[EUR][1000 genomes]
rs61601435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488086	1.00[EUR][1000 genomes]
rs73488087	1.00[EUR][1000 genomes]
rs73490116	1.00[EUR][1000 genomes]
rs73490119	1.00[EUR][1000 genomes]
rs73490134	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
3	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:88043800-88068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:88044000-88071400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:88044800-88072600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
10	chr6:88049200-88066800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:88051200-88071200	Weak transcription	Ovary	ovary
12	chr6:88051600-88070000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:88054600-88067400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:88054600-88068400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:88054800-88075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:88055000-88075800	Weak transcription	Primary B cells from cord blood	blood
18	chr6:88055200-88072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:88057400-88073800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:88057600-88077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:88061400-88070400	Weak transcription	Right Ventricle	heart
22	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
23	chr6:88062800-88070800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:88063400-88075800	Weak transcription	Aorta	Aorta

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