Variant report

Variant	rs41273289
Chromosome Location	chr6:88074904-88074905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005718	1.00[EUR][1000 genomes]
rs10484884	1.00[EUR][1000 genomes]
rs16879086	1.00[EUR][1000 genomes]
rs16879089	1.00[EUR][1000 genomes]
rs16879117	1.00[EUR][1000 genomes]
rs16879121	1.00[EUR][1000 genomes]
rs16879144	1.00[EUR][1000 genomes]
rs41273287	1.00[EUR][1000 genomes]
rs56832200	1.00[EUR][1000 genomes]
rs57150106	1.00[EUR][1000 genomes]
rs58499781	1.00[EUR][1000 genomes]
rs59256610	1.00[EUR][1000 genomes]
rs59298848	1.00[EUR][1000 genomes]
rs59329900	1.00[EUR][1000 genomes]
rs60261544	1.00[EUR][1000 genomes]
rs61601435	1.00[EUR][1000 genomes]
rs73488074	1.00[EUR][1000 genomes]
rs73488086	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488087	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73490116	1.00[EUR][1000 genomes]
rs73490119	1.00[EUR][1000 genomes]
rs73490134	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
2	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
6	chr6:88054800-88075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:88055000-88075800	Weak transcription	Primary B cells from cord blood	blood
9	chr6:88057600-88077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
11	chr6:88063400-88075800	Weak transcription	Aorta	Aorta
12	chr6:88068800-88075800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:88069800-88075800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:88074400-88075000	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:88074400-88075000	Enhancers	Brain Hippocampus Middle	brain
16	chr6:88074400-88075000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:88074400-88076800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:88074800-88075600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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