Variant report

Variant	rs73490780
Chromosome Location	chr13:62501881-62501882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57938780	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59390930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7322813	1.00[AMR][1000 genomes]
rs73488793	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488796	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490745	1.00[AMR][1000 genomes]
rs73494809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494889	0.88[AFR][1000 genomes]
rs73499061	1.00[AMR][1000 genomes]
rs73499070	1.00[AMR][1000 genomes]
rs73502870	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505018	1.00[AMR][1000 genomes]
rs74082096	1.00[AMR][1000 genomes]
rs7986197	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047037	chr13:62423544-62502041	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1040025	chr13:62424786-62508101	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62501600-62502000	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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