Variant report

Variant	rs73499070
Chromosome Location	chr13:62606979-62606980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57938780	1.00[AMR][1000 genomes]
rs7322813	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488482	1.00[AMR][1000 genomes]
rs73488793	1.00[AMR][1000 genomes]
rs73488796	1.00[AMR][1000 genomes]
rs73490745	1.00[AMR][1000 genomes]
rs73490780	1.00[AMR][1000 genomes]
rs73494483	1.00[AMR][1000 genomes]
rs73494809	1.00[AMR][1000 genomes]
rs73494814	1.00[AMR][1000 genomes]
rs73494815	1.00[AMR][1000 genomes]
rs73494818	1.00[AMR][1000 genomes]
rs73499061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73502870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505018	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505035	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505036	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74082096	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900251	chr13:62502166-62624458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900252	chr13:62502166-62687843	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900253	chr13:62515266-62660299	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900254	chr13:62549703-62660299	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900255	chr13:62549703-62680229	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900256	chr13:62569634-62660299	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62605800-62607800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:62606000-62607400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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