Variant report
| Variant | rs73499061 |
|---|---|
| Chromosome Location | chr13:62604046-62604047 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr13:62604012-62604468 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00358 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs57938780 | 1.00[AMR][1000 genomes] |
| rs7322813 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73488482 | 1.00[AMR][1000 genomes] |
| rs73488793 | 1.00[AMR][1000 genomes] |
| rs73488796 | 1.00[AMR][1000 genomes] |
| rs73490745 | 1.00[AMR][1000 genomes] |
| rs73490780 | 1.00[AMR][1000 genomes] |
| rs73494483 | 1.00[AMR][1000 genomes] |
| rs73494809 | 1.00[AMR][1000 genomes] |
| rs73494814 | 1.00[AMR][1000 genomes] |
| rs73494815 | 1.00[AMR][1000 genomes] |
| rs73494818 | 1.00[AMR][1000 genomes] |
| rs73499070 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73502870 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73505018 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73505035 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73505036 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74082096 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv900251 | chr13:62502166-62624458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv900252 | chr13:62502166-62687843 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv900253 | chr13:62515266-62660299 | Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv900254 | chr13:62549703-62660299 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv900255 | chr13:62549703-62680229 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv900256 | chr13:62569634-62660299 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62604000-62606400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
