Variant report
| Variant | rs73502713 |
|---|---|
| Chromosome Location | chr6:71716803-71716804 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:71715278..71718149-chr6:71720536..71722372,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs57717409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60282667 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61687111 | 1.00[AMR][1000 genomes] |
| rs73492602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494504 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494510 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494514 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494516 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494527 | 1.00[AMR][1000 genomes] |
| rs73494530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494531 | 1.00[AMR][1000 genomes] |
| rs73502710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73502711 | 1.00[AFR][1000 genomes] |
| rs73502721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73502722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73502725 | 1.00[AMR][1000 genomes] |
| rs73502730 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73502738 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv966627 | chr6:71699692-71726851 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71716600-71717000 | ZNF genes & repeats | ES-WA7 Cell Line | embryonic stem cell |
