Variant report

Variant	rs73502755
Chromosome Location	chr7:140608231-140608232
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140606906..140609520-chr7:140613515..140616264,2	K562	blood:
2	chr7:140605985..140608308-chr7:140611407..140613255,2	MCF-7	breast:
3	chr7:140588302..140590134-chr7:140608160..140610912,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17133505	0.88[AFR][1000 genomes]
rs2159474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56306956	0.83[AFR][1000 genomes]
rs57764941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58444706	1.00[AMR][1000 genomes]
rs58554741	0.81[AFR][1000 genomes]
rs59898525	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6974389	1.00[AMR][1000 genomes]
rs73494517	0.83[AFR][1000 genomes]
rs73494523	0.85[AFR][1000 genomes]
rs73502794	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73736258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140586000-140611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:140588600-140608400	Weak transcription	Ovary	ovary
3	chr7:140589800-140612000	Weak transcription	Fetal Intestine Large	intestine
4	chr7:140593800-140623200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:140594000-140610400	Weak transcription	Right Atrium	heart
6	chr7:140594000-140617200	Weak transcription	Lung	lung
7	chr7:140595800-140622400	Weak transcription	Aorta	Aorta
8	chr7:140597200-140623000	Weak transcription	Fetal Kidney	kidney
9	chr7:140599800-140612800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:140599800-140622000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:140600000-140622000	Weak transcription	Brain Anterior Caudate	brain
12	chr7:140600200-140612400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:140600800-140610400	Weak transcription	Left Ventricle	heart
14	chr7:140600800-140610400	Weak transcription	Psoas Muscle	Psoas
15	chr7:140600800-140612000	Weak transcription	Pancreas	Pancrea
16	chr7:140600800-140622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:140602400-140612800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:140602400-140613600	Weak transcription	Brain Substantia Nigra	brain
19	chr7:140602600-140609800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:140603200-140610400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:140603600-140610200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:140603600-140613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:140603600-140615800	Weak transcription	Primary T cells from cord blood	blood
24	chr7:140603800-140612000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:140604000-140622000	Weak transcription	Primary B cells from cord blood	blood
26	chr7:140604200-140611600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:140604200-140611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:140604200-140613000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:140604200-140613000	Weak transcription	Fetal Lung	lung
30	chr7:140604200-140623000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:140604400-140611800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:140604400-140611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:140605000-140618800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:140605200-140610600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr7:140606200-140609800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:140606200-140610400	Weak transcription	Fetal Intestine Small	intestine
37	chr7:140606200-140618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:140607200-140621800	Weak transcription	Dnd41	blood
39	chr7:140607600-140608600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:140607800-140612600	Weak transcription	Spleen	Spleen
41	chr7:140608000-140613000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:140608200-140608600	Enhancers	Adipose Nuclei	Adipose
43	chr7:140608200-140608600	ZNF genes & repeats	K562	blood
44	chr7:140608200-140611200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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