Variant report

Variant	rs6974389
Chromosome Location	chr7:140634455-140634456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr7:140634296-140634495	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000271611	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17624491	1.00[GIH][hapmap]
rs2159474	0.85[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676199	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57519830	1.00[EUR][1000 genomes]
rs57764941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58444706	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58554741	1.00[EUR][1000 genomes]
rs58801847	1.00[EUR][1000 genomes]
rs58861259	0.80[AFR][1000 genomes]
rs59228498	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59898525	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60606756	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61142678	1.00[EUR][1000 genomes]
rs61398083	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6464107	1.00[EUR][1000 genomes]
rs66565115	1.00[EUR][1000 genomes]
rs6970891	1.00[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs6977964	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6979327	1.00[MEX][hapmap]
rs73491841	1.00[EUR][1000 genomes]
rs73494523	1.00[EUR][1000 genomes]
rs73502739	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73502751	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73502755	1.00[AMR][1000 genomes]
rs73502794	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736258	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806060	1.00[EUR][1000 genomes]
rs7810726	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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