Variant report

Variant	rs7810726
Chromosome Location	chr7:140483231-140483232
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10278625	1.00[CHB][hapmap]
rs17161709	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17161736	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2159474	0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs55676199	1.00[EUR][1000 genomes]
rs56115934	0.81[AFR][1000 genomes]
rs57143942	0.85[AFR][1000 genomes]
rs57519830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57621953	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57764941	1.00[EUR][1000 genomes]
rs58161353	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58233801	0.83[AFR][1000 genomes]
rs58444706	1.00[EUR][1000 genomes]
rs58554741	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58801847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59228498	1.00[EUR][1000 genomes]
rs59898525	1.00[EUR][1000 genomes]
rs60144069	0.83[AFR][1000 genomes]
rs60606756	1.00[EUR][1000 genomes]
rs61142678	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61398083	1.00[EUR][1000 genomes]
rs62487902	0.85[AFR][1000 genomes]
rs6464107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66565115	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970891	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6974389	1.00[EUR][1000 genomes]
rs6977964	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6979327	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs73491839	0.97[AFR][1000 genomes]
rs73491841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73492596	0.83[AFR][1000 genomes]
rs73494520	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73494523	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73502712	0.88[AFR][1000 genomes]
rs73502739	1.00[EUR][1000 genomes]
rs73502751	1.00[EUR][1000 genomes]
rs73502794	1.00[EUR][1000 genomes]
rs73736258	1.00[EUR][1000 genomes]
rs73736589	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7786128	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7793476	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7797753	0.81[YRI][hapmap]
rs7806060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810757	0.87[ASW][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140398200-140492600	Weak transcription	Colonic Mucosa	Colon
2	chr7:140398600-140491800	Weak transcription	Fetal Brain Male	brain
3	chr7:140404800-140489000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:140404800-140517000	Weak transcription	Psoas Muscle	Psoas
5	chr7:140415000-140504400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:140415200-140506600	Weak transcription	Gastric	stomach
7	chr7:140428200-140489400	Weak transcription	Small Intestine	intestine
8	chr7:140440600-140492600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:140441400-140504000	Weak transcription	NHLF	lung
10	chr7:140444200-140485600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:140452400-140506200	Weak transcription	Pancreas	Pancrea
12	chr7:140464800-140495600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:140465600-140500400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:140465800-140508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:140466400-140484800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:140466400-140487600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:140466600-140484400	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:140466600-140494600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:140467000-140505000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:140467200-140484000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:140468000-140486000	Weak transcription	HepG2	liver
22	chr7:140469000-140499600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:140469000-140503000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:140469000-140511200	Weak transcription	Right Ventricle	heart
25	chr7:140469200-140519600	Weak transcription	Aorta	Aorta
26	chr7:140469400-140484200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:140469400-140488200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:140469600-140484200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:140470800-140484400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:140470800-140484400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr7:140470800-140486000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:140470800-140504800	Weak transcription	NHEK	skin
33	chr7:140471000-140484400	Strong transcription	Fetal Intestine Large	intestine
34	chr7:140471200-140484200	Strong transcription	Liver	Liver
35	chr7:140471200-140488000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:140471400-140494600	Strong transcription	Adipose Nuclei	Adipose
37	chr7:140471600-140484400	Strong transcription	Placenta	Placenta
38	chr7:140472000-140484600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:140472800-140484000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:140472800-140502000	Weak transcription	HMEC	breast
41	chr7:140473000-140483400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr7:140473600-140513600	Weak transcription	Fetal Heart	heart
43	chr7:140474600-140511000	Weak transcription	Brain Substantia Nigra	brain
44	chr7:140475000-140509800	Weak transcription	Spleen	Spleen
45	chr7:140475000-140580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:140475600-140484600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:140475600-140494400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:140475600-140499600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:140475800-140492600	Weak transcription	HSMM	muscle
50	chr7:140477000-140500000	Weak transcription	Esophagus	oesophagus

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