Variant report

Variant	rs73736589
Chromosome Location	chr7:140475466-140475467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140473570..140476924-chr7:140480357..140483347,3	K562	blood:

Variant related genes	Relation type
ENSG00000157764	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17161709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57143942	0.83[AFR][1000 genomes]
rs57519830	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57621953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58161353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58233801	0.85[AFR][1000 genomes]
rs58554741	0.83[AFR][1000 genomes]
rs58801847	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60088791	0.81[AFR][1000 genomes]
rs60144069	0.85[AFR][1000 genomes]
rs62487902	0.83[AFR][1000 genomes]
rs6464107	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6977964	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6979327	0.88[AFR][1000 genomes]
rs73491839	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73491841	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73492596	0.81[AFR][1000 genomes]
rs73494520	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73502712	0.90[AFR][1000 genomes]
rs7786128	0.86[AFR][1000 genomes]
rs7793476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797753	0.81[AFR][1000 genomes]
rs7806060	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7810726	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140398200-140492600	Weak transcription	Colonic Mucosa	Colon
2	chr7:140398600-140491800	Weak transcription	Fetal Brain Male	brain
3	chr7:140404800-140489000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:140404800-140517000	Weak transcription	Psoas Muscle	Psoas
5	chr7:140415000-140504400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:140415200-140506600	Weak transcription	Gastric	stomach
7	chr7:140424400-140476600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:140428200-140489400	Weak transcription	Small Intestine	intestine
9	chr7:140428600-140476600	Weak transcription	NHDF-Ad	bronchial
10	chr7:140438400-140482400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:140440400-140476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:140440600-140492600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:140441400-140504000	Weak transcription	NHLF	lung
14	chr7:140444200-140485600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:140452400-140506200	Weak transcription	Pancreas	Pancrea
16	chr7:140454000-140476000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:140458200-140478600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:140460000-140478600	Weak transcription	Brain Germinal Matrix	brain
19	chr7:140462800-140475600	Weak transcription	HUVEC	blood vessel
20	chr7:140464800-140495600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:140465600-140500400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:140465800-140508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:140466400-140479600	Strong transcription	Primary T cells from cord blood	blood
24	chr7:140466400-140484800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr7:140466400-140487600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:140466600-140484400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:140466600-140494600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:140467000-140475600	Weak transcription	A549	lung
29	chr7:140467000-140478800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:140467000-140505000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:140467200-140484000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:140468000-140486000	Weak transcription	HepG2	liver
33	chr7:140468200-140478000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:140468800-140477200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:140469000-140478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:140469000-140499600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:140469000-140503000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:140469000-140511200	Weak transcription	Right Ventricle	heart
39	chr7:140469200-140475600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:140469200-140519600	Weak transcription	Aorta	Aorta
41	chr7:140469400-140484200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:140469400-140488200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr7:140469600-140484200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:140470000-140475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:140470000-140483200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:140470200-140475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:140470200-140475800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:140470800-140484400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:140470800-140484400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr7:140470800-140486000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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