Variant report

Variant	rs6464107
Chromosome Location	chr7:140546701-140546702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140545764..140548574-chr7:140553287..140554833,2	K562	blood:
2	chr7:140546330..140547898-chr7:140557468..140559199,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17161709	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17161736	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2159474	1.00[EUR][1000 genomes]
rs55676199	1.00[EUR][1000 genomes]
rs56306956	0.83[AFR][1000 genomes]
rs57143942	0.86[AFR][1000 genomes]
rs57519830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57621953	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57764941	1.00[EUR][1000 genomes]
rs58161353	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58444706	1.00[EUR][1000 genomes]
rs58554741	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58801847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59228498	1.00[EUR][1000 genomes]
rs59898525	1.00[EUR][1000 genomes]
rs60606756	1.00[EUR][1000 genomes]
rs61142678	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61398083	1.00[EUR][1000 genomes]
rs62487902	0.83[AFR][1000 genomes]
rs66565115	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970891	1.00[EUR][1000 genomes]
rs6974389	1.00[EUR][1000 genomes]
rs6977964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6979327	0.88[AFR][1000 genomes]
rs73491839	0.92[AFR][1000 genomes]
rs73491841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73492596	0.85[AFR][1000 genomes]
rs73494517	0.83[AFR][1000 genomes]
rs73494520	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73494523	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73502712	0.90[AFR][1000 genomes]
rs73502739	1.00[EUR][1000 genomes]
rs73502751	1.00[EUR][1000 genomes]
rs73502794	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73736258	1.00[EUR][1000 genomes]
rs73736589	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7786128	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7793476	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7806060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1024264	chr7:140539039-140576522	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1027576	chr7:140539039-140576935	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140475000-140580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:140479600-140559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:140493800-140551800	Weak transcription	Left Ventricle	heart
4	chr7:140494400-140555600	Weak transcription	Hela-S3	cervix
5	chr7:140498000-140548600	Weak transcription	A549	lung
6	chr7:140500400-140548800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:140507400-140548000	Weak transcription	Fetal Brain Female	brain
8	chr7:140508200-140557000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:140511000-140563400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:140511200-140549200	Weak transcription	Fetal Kidney	kidney
11	chr7:140512000-140546800	Weak transcription	Thymus	Thymus
12	chr7:140516800-140553000	Weak transcription	Spleen	Spleen
13	chr7:140517400-140548400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:140518800-140550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:140520800-140557000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:140522800-140549400	Weak transcription	Lung	lung
17	chr7:140523200-140554000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:140524400-140556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:140524400-140567800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:140524800-140549600	Weak transcription	NH-A	brain
21	chr7:140525200-140567400	Weak transcription	Right Ventricle	heart
22	chr7:140525400-140549800	Weak transcription	HUVEC	blood vessel
23	chr7:140525600-140557400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:140526000-140547200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:140526000-140556600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:140527600-140550400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:140527600-140573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:140528600-140563400	Weak transcription	Esophagus	oesophagus
29	chr7:140529600-140558000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:140530400-140564800	Weak transcription	Aorta	Aorta
31	chr7:140530600-140557000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:140530600-140573200	Weak transcription	Gastric	stomach
33	chr7:140531000-140558400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:140532400-140551800	Weak transcription	HepG2	liver
35	chr7:140533200-140550400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:140533600-140561600	Weak transcription	Small Intestine	intestine
37	chr7:140534400-140552200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:140534600-140548000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:140534600-140550400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr7:140534600-140552000	Weak transcription	NHDF-Ad	bronchial
41	chr7:140534600-140553200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:140534600-140557000	Weak transcription	Brain Anterior Caudate	brain
43	chr7:140534600-140567600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:140534600-140570200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr7:140534800-140550400	Weak transcription	Placenta	Placenta
46	chr7:140537000-140547400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:140537400-140547000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:140537400-140548200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:140540000-140546800	Weak transcription	Fetal Muscle Leg	muscle
50	chr7:140541000-140547200	Strong transcription	Primary B cells from cord blood	blood

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