Variant report
| Variant | rs55676199 |
|---|---|
| Chromosome Location | chr7:140633396-140633397 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:140623725..140626002-chr7:140631317..140633883,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271611 | TF binding region |
| ENSG00000157764 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs2159474 | 1.00[EUR][1000 genomes] |
| rs57519830 | 1.00[EUR][1000 genomes] |
| rs57764941 | 1.00[EUR][1000 genomes] |
| rs58444706 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58554741 | 1.00[EUR][1000 genomes] |
| rs58801847 | 1.00[EUR][1000 genomes] |
| rs58861259 | 0.84[AFR][1000 genomes] |
| rs59228498 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59898525 | 1.00[EUR][1000 genomes] |
| rs60606756 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61142678 | 1.00[EUR][1000 genomes] |
| rs61398083 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6464107 | 1.00[EUR][1000 genomes] |
| rs66565115 | 1.00[EUR][1000 genomes] |
| rs6960136 | 0.81[AFR][1000 genomes] |
| rs6970891 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6974389 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6977964 | 1.00[EUR][1000 genomes] |
| rs73491841 | 1.00[EUR][1000 genomes] |
| rs73494523 | 1.00[EUR][1000 genomes] |
| rs73497971 | 0.87[AFR][1000 genomes] |
| rs73497992 | 0.85[AFR][1000 genomes] |
| rs73502739 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73502751 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73502794 | 1.00[EUR][1000 genomes] |
| rs73736258 | 1.00[EUR][1000 genomes] |
| rs73739309 | 0.81[AFR][1000 genomes] |
| rs7806060 | 1.00[EUR][1000 genomes] |
| rs7810726 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017980 | chr7:140601863-140721368 | Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030195 | chr7:140615828-140746345 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
