Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:140625504..140628313-chr7:140642636..140644756,2	K562	blood:
2	chr7:140625343..140628260-chr7:140713839..140715821,2	MCF-7	breast:
3	chr7:140554945..140557362-chr7:140625940..140628286,2	K562	blood:

Variant related genes	Relation type
ENSG00000090263	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2159474	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676199	1.00[EUR][1000 genomes]
rs57519830	1.00[EUR][1000 genomes]
rs57621953	0.81[AFR][1000 genomes]
rs57764941	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58444706	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58554741	1.00[EUR][1000 genomes]
rs58801847	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59228498	1.00[EUR][1000 genomes]
rs59898525	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60606756	1.00[EUR][1000 genomes]
rs61142678	1.00[EUR][1000 genomes]
rs61398083	1.00[EUR][1000 genomes]
rs62485369	0.83[AFR][1000 genomes]
rs6464107	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs66565115	1.00[EUR][1000 genomes]
rs6970891	1.00[EUR][1000 genomes]
rs6974389	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977964	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6979327	0.89[AFR][1000 genomes]
rs73491841	1.00[EUR][1000 genomes]
rs73494523	1.00[EUR][1000 genomes]
rs73502712	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73502739	1.00[EUR][1000 genomes]
rs73502751	1.00[EUR][1000 genomes]
rs73502755	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73736258	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786128	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7806060	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7810726	1.00[EUR][1000 genomes]
rs7810757	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140625200-140627200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:140625200-140627400	Weak transcription	Small Intestine	intestine
3	chr7:140625400-140627000	Enhancers	Fetal Heart	heart
4	chr7:140625400-140628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:140625400-140628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:140625600-140628000	Weak transcription	NHEK	skin
7	chr7:140625600-140628200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:140626000-140628200	Weak transcription	Aorta	Aorta
9	chr7:140626800-140627000	Enhancers	Pancreatic Islets	Pancreatic Islet

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