Variant report

Variant	rs6979327
Chromosome Location	chr7:140578608-140578609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17133505	0.81[AFR][1000 genomes]
rs17161709	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17161736	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2159474	0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap]
rs57519830	0.86[AFR][1000 genomes]
rs57621953	0.91[AFR][1000 genomes]
rs58161353	0.90[AFR][1000 genomes]
rs58801847	0.92[AFR][1000 genomes]
rs6464107	0.88[AFR][1000 genomes]
rs6970891	1.00[MEX][hapmap]
rs6977964	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs73491839	0.87[AFR][1000 genomes]
rs73491841	0.85[AFR][1000 genomes]
rs73494520	0.90[AFR][1000 genomes]
rs73502712	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73502794	0.89[AFR][1000 genomes]
rs73736589	0.88[AFR][1000 genomes]
rs7786128	0.97[AFR][1000 genomes]
rs7793476	0.83[AFR][1000 genomes]
rs7797753	0.85[YRI][hapmap]
rs7806060	0.88[AFR][1000 genomes]
rs7810726	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs7810757	0.87[ASW][hapmap];0.83[LWK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029363	chr7:140567136-140594073	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv1015486	chr7:140567340-140581429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140475000-140580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:140547200-140582400	Weak transcription	Fetal Stomach	stomach
3	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
4	chr7:140549400-140579000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:140563600-140586000	Weak transcription	K562	blood
6	chr7:140568000-140581200	Weak transcription	Pancreas	Pancrea
7	chr7:140568000-140586000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:140568400-140580800	Weak transcription	HepG2	liver
9	chr7:140570600-140580400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:140570600-140606000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:140570800-140583000	Weak transcription	Primary B cells from cord blood	blood
12	chr7:140570800-140584200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:140571000-140580600	Weak transcription	Lung	lung
14	chr7:140573600-140587800	Weak transcription	Left Ventricle	heart
15	chr7:140573800-140581600	Weak transcription	Fetal Heart	heart
16	chr7:140576600-140585600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:140577000-140581200	Weak transcription	Brain Angular Gyrus	brain
18	chr7:140577000-140586800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:140577000-140591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:140577200-140580000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:140577400-140580600	Weak transcription	GM12878-XiMat	blood
22	chr7:140577400-140581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:140577400-140581200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:140577400-140585600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:140577600-140586400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr7:140577600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:140577600-140598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:140578000-140581400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:140578200-140581200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr7:140578400-140578800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr7:140578600-140580200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:140578600-140585600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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