Variant report

Variant	rs73503172
Chromosome Location	chr6:71938452-71938453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56759120	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56970720	0.81[EUR][1000 genomes]
rs58216734	0.81[EUR][1000 genomes]
rs58397574	0.81[EUR][1000 genomes]
rs59087266	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60772436	0.81[EUR][1000 genomes]
rs6921743	0.81[EUR][1000 genomes]
rs73503169	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73503175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749839	0.81[EUR][1000 genomes]
rs73749841	0.81[EUR][1000 genomes]
rs73749844	0.81[EUR][1000 genomes]
rs73749853	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71931200-71939400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:71936600-71939600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:71936800-71938800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:71936800-71939200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:71936800-71939600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:71937200-71938800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:71937200-71939000	Enhancers	HSMM	muscle
8	chr6:71937200-71940000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:71937200-71940200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:71937200-71940200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:71937400-71938800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:71937400-71939000	Enhancers	HUVEC	blood vessel
13	chr6:71937400-71939800	Weak transcription	Fetal Thymus	thymus
14	chr6:71937400-71940200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:71937400-71946600	Weak transcription	Primary B cells from cord blood	blood
16	chr6:71937600-71938600	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:71937600-71938800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:71937800-71939200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:71937800-71939800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:71937800-71940200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:71938000-71938800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:71938000-71938800	Enhancers	Hela-S3	cervix
23	chr6:71938200-71938600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:71938200-71938600	Enhancers	NH-A	brain
25	chr6:71938200-71938600	Enhancers	NHEK	skin
26	chr6:71938400-71938600	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr6:71938400-71939000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:71938400-71939000	Enhancers	A549	lung
29	chr6:71938400-71939000	Enhancers	HMEC	breast
30	chr6:71938400-71939600	Enhancers	Osteobl	bone
31	chr6:71938400-71940000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:71938400-71940000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:71938400-71940000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:71938400-71940200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:71938400-71940600	Enhancers	Primary T cells fromperipheralblood	blood

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