Variant report

Variant	rs73505104
Chromosome Location	chr6:71964692-71964693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10945297	0.86[AFR][1000 genomes]
rs58416751	1.00[AFR][1000 genomes]
rs73501195	0.83[AFR][1000 genomes]
rs8180646	0.86[AFR][1000 genomes]
rs9342831	0.86[AFR][1000 genomes]
rs9346451	0.86[AFR][1000 genomes]
rs9346452	0.86[AFR][1000 genomes]
rs9354985	0.86[AFR][1000 genomes]
rs9360444	0.86[AFR][1000 genomes]
rs9364148	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71957800-71965000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:71958000-71965000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:71959800-71967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:71961200-71965200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:71962600-71965200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:71963000-71965000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:71963200-71965600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:71963600-71964800	Enhancers	Brain Hippocampus Middle	brain
10	chr6:71963800-71967600	Weak transcription	Aorta	Aorta
11	chr6:71963800-71968400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:71964000-71965000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:71964000-71967200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:71964000-71968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:71964200-71964800	Enhancers	NHLF	lung
16	chr6:71964400-71964800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:71964400-71966800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:71964400-71966800	Weak transcription	Brain Anterior Caudate	brain
19	chr6:71964400-71966800	Weak transcription	Right Ventricle	heart
20	chr6:71964400-71967000	Weak transcription	Adipose Nuclei	Adipose
21	chr6:71964400-71967600	Weak transcription	Brain Angular Gyrus	brain
22	chr6:71964400-71967600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:71964400-71967600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:71964400-71967600	Weak transcription	NHDF-Ad	bronchial
25	chr6:71964400-71967800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:71964400-71967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:71964400-71967800	Weak transcription	Placenta	Placenta
28	chr6:71964600-71967800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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