Variant report

Variant	rs10945297
Chromosome Location	chr6:71978577-71978578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12055385	0.90[ASN][1000 genomes]
rs13218874	0.87[ASN][1000 genomes]
rs2208845	0.83[ASN][1000 genomes]
rs2224656	0.82[ASN][1000 genomes]
rs3756934	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58416751	0.86[AFR][1000 genomes]
rs59769896	0.89[ASN][1000 genomes]
rs60555932	0.87[ASN][1000 genomes]
rs6908858	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73505104	0.86[AFR][1000 genomes]
rs7452880	0.81[AMR][1000 genomes]
rs8180646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9342827	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9342828	0.89[ASN][1000 genomes]
rs9342831	1.00[AFR][1000 genomes]
rs9346451	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346455	0.88[ASN][1000 genomes]
rs9346459	0.80[ASN][1000 genomes]
rs9354985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9354996	0.83[AMR][1000 genomes]
rs9360443	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364149	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364150	0.89[ASN][1000 genomes]
rs9364151	0.83[ASN][1000 genomes]
rs9364152	0.85[ASN][1000 genomes]
rs9364153	0.82[ASN][1000 genomes]
rs9364160	0.81[AMR][1000 genomes]
rs9455418	0.84[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71968000-71980400	Weak transcription	Aorta	Aorta
2	chr6:71976400-71980000	Weak transcription	Spleen	Spleen
3	chr6:71976400-71980400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:71978000-71979000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:71978400-71978600	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:71978400-71979000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:71978400-71979400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:71978400-71979400	Enhancers	Primary B cells from peripheral blood	blood

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