Variant report

Variant	rs12055385
Chromosome Location	chr6:71996789-71996790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10945297	0.90[ASN][1000 genomes]
rs1322759	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16881116	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2208845	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2224656	0.92[ASN][1000 genomes]
rs2273888	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58732838	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59769896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60555932	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6908858	0.93[ASN][1000 genomes]
rs6935796	0.85[ASN][1000 genomes]
rs7756709	0.96[EUR][1000 genomes]
rs7773440	0.86[ASN][1000 genomes]
rs8180646	0.86[ASN][1000 genomes]
rs9294899	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9342827	0.89[ASN][1000 genomes]
rs9342828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9342829	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9342830	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346451	0.88[ASN][1000 genomes]
rs9346452	0.88[ASN][1000 genomes]
rs9346455	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9346457	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9346459	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346460	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346463	0.82[EUR][1000 genomes]
rs9354985	0.93[ASN][1000 genomes]
rs9354989	0.83[AMR][1000 genomes]
rs9354993	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9360443	0.83[ASN][1000 genomes]
rs9360444	0.90[ASN][1000 genomes]
rs9360445	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9360447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360448	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9364148	0.93[ASN][1000 genomes]
rs9364149	0.93[ASN][1000 genomes]
rs9364150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9364151	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9364152	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9364153	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9364155	0.82[AMR][1000 genomes]
rs9455418	0.91[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991600-71997800	Weak transcription	Lung	lung
5	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71992000-71997800	Weak transcription	Esophagus	oesophagus
7	chr6:71993400-71996800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:71993400-71997200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:71993600-71996800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:71994200-71997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:71994800-71997000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:71994800-71997200	Weak transcription	Brain Substantia Nigra	brain
13	chr6:71994800-71997600	Weak transcription	Pancreas	Pancrea
14	chr6:71994800-71997800	Weak transcription	Gastric	stomach
15	chr6:71995200-71997400	Weak transcription	NHEK	skin
16	chr6:71995400-71997000	Weak transcription	HMEC	breast
17	chr6:71995400-71997400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:71995600-71997000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:71995600-71997600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:71995800-71997600	Enhancers	Psoas Muscle	Psoas
21	chr6:71996000-71996800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:71996000-71997000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:71996000-71997400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:71996200-71996800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:71996200-71997000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:71996200-71997000	Enhancers	NHDF-Ad	bronchial
27	chr6:71996200-71997600	Weak transcription	Spleen	Spleen
28	chr6:71996600-71996800	Weak transcription	Fetal Thymus	thymus
29	chr6:71996600-71997200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:71996600-71997600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:71996600-71997600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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