Variant report

Variant	rs16881116
Chromosome Location	chr6:72031488-72031489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72027104..72028624-chr6:72030659..72032641,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1022744	0.81[JPT][hapmap]
rs12055385	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1322759	0.83[ASN][1000 genomes]
rs1322761	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2208845	0.84[CHB][hapmap]
rs2273888	0.92[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs3756934	0.85[ASN][1000 genomes]
rs58732838	0.83[ASN][1000 genomes]
rs59769896	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60555932	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7753757	0.94[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9294899	0.92[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs9342828	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9342829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9342830	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9342831	0.84[ASN][1000 genomes]
rs9346455	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9346457	0.83[ASN][1000 genomes]
rs9346459	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9346460	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9346462	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346463	0.88[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9351807	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9354985	1.00[CEU][hapmap]
rs9354993	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9354994	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9354996	0.88[CEU][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs9360445	0.83[ASN][1000 genomes]
rs9360447	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360448	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9364149	0.82[CEU][hapmap]
rs9364150	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9364152	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9364153	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9364160	0.87[ASN][1000 genomes]
rs9364162	0.87[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
6	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:72018000-72043200	Weak transcription	HSMM	muscle
11	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
12	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72029400-72033800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:72030000-72033600	Weak transcription	Psoas Muscle	Psoas
15	chr6:72030000-72033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:72030600-72031600	Enhancers	Lung	lung
17	chr6:72030800-72031600	Enhancers	Pancreas	Pancrea
18	chr6:72030800-72031600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:72031200-72031600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:72031200-72031600	Enhancers	Esophagus	oesophagus
21	chr6:72031200-72031600	Enhancers	Left Ventricle	heart
22	chr6:72031200-72031800	Enhancers	Liver	Liver
23	chr6:72031400-72031600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:72031400-72031600	Enhancers	Placenta	Placenta
25	chr6:72031400-72031600	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:72031400-72033600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung

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